Statistic
This page displays the statistics and sources of all data collected in YNA. The downloadable files are the rearranged version used in genome-wide gene miner, biological significance analyzer and chromatin regulation viewer functions. The raw data can be found in original journal websites.
Genes and Gene Expression Data | ||
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Data Type | Statistic | Source |
Gene Summary Information |
| SGD Database |
Expression Profiles |
| Dissecting the Regulatory Circuitry of a Eukaryotic Genom Cell 1998, Holstege et al. [Pubmed] |
Nucleosome Occupancy Data | ||
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Data Type | Statistic | Source |
Nucleosome Occupancy |
| The DNA-encoded nucleosome organization of a eukaryotic genome Nature 2009, Kaplan et al. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals PLOS Computational Biology 2008, Field et al. A high-resolution atlas of nucleosome occupancy in yeast Nature Genetics 2007, Lee et al. |
Histone Modification Data | ||
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Data Type | Statistic | Source |
Histone Modification |
| Genome-wide map of nucleosome acetylation and methylation in yeast Cell 2005, Pokholok et al. |
Histone Acetylation |
| H3 lysine 4 is acetylated at active gene promoters and is regulated by H3 lysine 4 methylation PLOS Genetics 2011, Guillemette et al. |
Histone Methylation |
| Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation Nature LETTERS 2007, Kirmizis et al. |
Histone Ubiquitination |
| Ubp8 and Ubp10 deubiquitinate different cellular pools of H2BK123 Genes Development 2011, Schulze et al. |
Histone Variant Data | ||
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Data Type | Statistic | Source |
Histone Variant |
| Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning PLOS Biology 2011, Guillemette et al. |
Other Data | ||
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Data Type | Statistic | Source |
Binding Sites of Regulatory Proteins |
| A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces Molecular Cell 2011, Venters BJ et al. [Pubmed] |
Gene Functional Catalogue |
| The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes Nucleic Acids Research 2004, Ruepp et al. [Pubmed] |
Analysis related to specific mutants |
| Recruitment of the INO80 Complex by H2A Phosphorylation Links ATP-Dependent Chromatin Remodeling with DNA Double-Strand Break Repair Cell 2004, Attikum et al. [Pubmed] |